Difference between revisions of "So you want to set up a lab"

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= Operating System level =
 
= Operating System level =
We use Operating system to describe all software components that are not particular to our field. Thus for the purposes of this discussion, python and a queuing system are considered part of the operating system level.  [[Install operating system]]
+
here we use Operating system to describe all software components that are not particular to our field. Thus for the purposes of this discussion, python and a queuing system are considered part of the operating system level.  [[Install operating system]]
  
 
= Middleware level =
 
= Middleware level =

Revision as of 17:25, 19 March 2014

Here is how I would set up a computational lab, one that could join the Worldwide ZINC network.

Requirements and assumptions

This page describes setting up a full computational pharmacology research lab. We describe the minimum setup, plus options for expansion. The entry level assumes you can spend $20K on servers and $2K on a workstation, or you already own equivalent or better hardware. You'll need an acoustically insulated air conditioned room. It would help to have someone with system administration experience for 100 hours (3 weeks) for the purchase, acquisition and deployment of the hardware and installation of the operating system and software components. Once running, expect 1 day/month/cluster plus 1 day/month/rack of expert sysadmin to keep your cluster running smoothly. Once you have all the software and hardware ready, you can get a cluster up and running in a day, and another day to get our software running on it.

Narrative

Before starting, let's talk about what you need for a successful computational pharmacology cluster. Cluster Narrative.

Physical level

We discuss options for acquiring various sizes of hardware in Cluster Theory. More thoughts: Acquire and deploy hardware

Operating System level

here we use Operating system to describe all software components that are not particular to our field. Thus for the purposes of this discussion, python and a queuing system are considered part of the operating system level. Install operating system

Middleware level

We use middleware to mean 3rd party software required by our software that is specific to our field and that you would not normally expect to find installed on a new computer. Set up middleware for a computational drug discovery lab.

Client Application Software

Feeware

Server Application Software

Each product is licensed and distributed separately.

Operations

Once the system is set up and running, it will need to be maintained. Please see the System administrator's guide