Difference between revisions of "So you want to set up a lab"

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= Physical level =
= Physical level =
We discuss options for acquiring hardware in [[Cluster Theory]].
[[Acquire and deploy hardware]]
[[Acquire and deploy hardware]]

Revision as of 00:40, 14 March 2014

Here is how I would set up a computational lab, one that could join the Worldwide ZINC network.

Requirements and assumptions

This page describes setting up a full computational pharmacology research lab. We describe the minimum setup, plus options for expansion. The entry level assumes you can spend: $20K on servers and $2K on a workstation. You'll need an acoustically insulated air conditioned room. It would help to have someone with system administration experience for 100 hours (3 weeks) for the initial set up, and then 1 day/month for maintenance.

When you have all the software and hardware, you can get a docking lab up and running at a basic level in less than a day. If you do not have all the software and hardware, it will take longer. If you've never run a molecular docking lab, allow a week to learn the basics.

Physical level

We discuss options for acquiring hardware in Cluster Theory.

Acquire and deploy hardware

Operating System level

Install operating system

Middleware level

Set up middleware for a computational drug discovery lab.

Server Application Software

Install DOCK 3.7

Install SEA

Install DOCK 6

Install ZINC

Install DOCK Blaster

Client Application Software







Monthly maintenance tasks.


Security review

Software upgrades