DOCK Blaster:Custom Database
There are two kinds of custom database supported by ZINC: user uploads and user subsets.
Sometimes, the molecules you want to dock are not in ZINC. To load your own molecules, go to http://zinc8.docking.org/upload.shtml and browse to load your molecules in SMILES (best), mol2 or SDF format. Click on "upload & build" and then wait while we process your molecules.
Sometimes, you want to download more than 500 molecules matching certain criteria. To do this, you must create a subset. To create a subset, click on "Create Subset" in the ZINC Results browser, which you reach after performing a search using the | ZINC Search Tool. . You will be assigned a number for your subset. Wait a little while, then browse and download your subset.