How to run and analyze a DOCK run by hand
These step-by-step instructions have been compiled while running the first HEI-docking campaign with DOCK . Hence, they are biased towards the mistakes I made and the specificities of the binding site of the particular protein I was using and are probably far from being complete...
The workflow consists of the following steps:
Most of the "wisdom" in this document is based on patient explanations by Michael Mysinger (especially section 3), Johannes Hermann (section 1) and John Irwin. --Kolb 17:48, 9 June 2008 (PDT)